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© The Rockefeller University Press, 0021-9525/1999/12/1409/ $5.00
The Journal of Cell Biology, Volume 147, Number 7, December 27, 1999 1409-1418


Original Article

Intranuclear Anchoring of Repetitive DNA Sequences: Centromeres, Telomeres, and Ribosomal DNA

Klara Weipoltshammera, Christian Schöfera, Marlene Almedera, Vlada V. Philimonenkob, Klemens Freia, Franz Wachtlera, and Pavel Hozákb
a Institute for Histology and Embryology, University Vienna, A-1090 Vienna, Austria
b Institute of Experimental Medicine, Academy of Sciences of the Czech Republic, Prague 4-Krc, Czech Republic

Correspondence to: Klara Weipoltshammer, Institute for Histology and Embryology, University Vienna, Schwarzspanierstraße 17, A-1090 Vienna, Austria. Tel:43-1 4277 61346 Fax:43-1 4277 9613 E-mail:klara.weipoltshammer{at}univie.ac.at.

Centromeres, telomeres, and ribosomal gene clusters consist of repetitive DNA sequences. To assess their contributions to the spatial organization of the interphase genome, their interactions with the nucleoskeleton were examined in quiescent and activated human lymphocytes. The nucleoskeletons were prepared using "physiological" conditions. The resulting structures were probed for specific DNA sequences of centromeres, telomeres, and ribosomal genes by in situ hybridization; the electroeluted DNA fractions were examined by blot hybridization. In both nonstimulated and stimulated lymphocytes, centromeric alpha-satellite repeats were almost exclusively found in the eluted fraction, while telomeric sequences remained attached to the nucleoskeleton. Ribosomal genes showed a transcription-dependent attachment pattern: in unstimulated lymphocytes, transcriptionally inactive ribosomal genes located outside the nucleolus were eluted completely. When comparing transcription unit and intergenic spacer, significantly more of the intergenic spacer was removed. In activated lymphocytes, considerable but similar amounts of both rDNA fragments were eluted. The results demonstrate that: (a) the various repetitive DNA sequences differ significantly in their intranuclear anchoring, (b) telomeric rather than centromeric DNA sequences form stable attachments to the nucleoskeleton, and (c) different attachment mechanisms might be responsible for the interaction of ribosomal genes with the nucleoskeleton.

Key Words: human lymphocytes, interphase nuclei, nucleoskeleton, nuclear matrix, fluorescence in situ hybridization


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