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Correspondence to Jürgen Schweizer: schweizer{at}dkfz.de
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| What's in a name? That which we call a rose, by any other name would smell as sweet (Romeo and Juliet, Act II, Sc. ii). |
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The first attempt at providing a comprehensive keratin nomenclature dates back to 1982. Moll et al. (1982) used 2D isoelectric focusing and SDS-PAGE to map the keratin profiles of a large number of normal human epithelia, tumors, and cultured cells. They grouped the basic-to-neutral type II keratins as K1K8 and the acidic type I keratins as K9K19 (Moll et al., 1982). Although not open-ended for type II keratins, this system has so far proven manageable, as the incorporation of a few novel type II keratins could be accomplished by the addition of discriminatory suffix letters to keratins exhibiting similar gel-electrophoretic properties (Collin et al., 1992a,b; Winter et al., 1998). Moreover, the Moll nomenclature has not been further challenged by the "hard"
-keratins of hair and nail (hair keratins), as these keratins were named Ha (acidic, type I) or Hb (basic to neutral, type II) followed by a number, with H standing for hair (Heid and Franke, 1986; Rogers et al., 1998, 2000). Overall, however, the present naming of keratins has not been systematic, and a reorganized and durable scheme is long overdue.
Genome analyses have recently demonstrated that humans possess a total of 54 functional keratin genes, i.e., 28 type I and 26 type II keratins, forming two clusters of 27 genes each on chromosomes 17q21.2 and 12q13.13 (the gene for the type I keratin K18 being located in the type II keratin gene domain; Hesse et al., 2001, 2004; Rogers et al., 2004, 2005; Table I ). Recognition of the extent of this large mammalian gene family led to a suggested revised nomenclature (Hesse et al., 2004) based on an extended Moll system, K1K8, and K9K24 (Moll et al., 1982, 1990; Chandler et al., 1991; Zhang et al., 2001; Sprecher et al., 2002), and conceptually close to an earlier proposal (Rogers and Powell, 1993). In this nomenclature, all human type I keratins were named Ka9 to KaX and all type II keratins were named Kb1 to KbY, thus, enabling type I and II keratins of other mammalian species to be added consecutively into this open-ended system. At the 2004 Gordon Conference on Intermediate Filaments in Oxford, an initiative to achieve international consensus led to the formation of a broad-based Keratin Nomenclature Committee that included active investigators in the keratin field and members of the Human Genome Nomenclature Committee (HGNC) and the Mouse Genome Nomenclature Committee. This committee evaluated several potential nomenclature schemes and, after extensive deliberation and consultation with other colleagues in the intermediate filament field, arrived at the consensus nomenclature system that is detailed in the following sections.
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For both type I and II keratins, these four categories are numerically arranged in the following order (Table II ): (1) human epithelial keratins, (2) human hair keratins, (3) nonhuman epithelial/hair keratins, and (4) human keratin pseudogenes.
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| New nomenclature for type I keratins Human epithelial keratins |
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K31, etc). Note that K33a and K33b (the former Ha3-I and -II) are isoforms.
Nonhuman epithelial and hair keratins
We projected that 30 positions, 4170 (Table II), i.e., considerably more than those comprising the human type I epithelial keratins, should be sufficient to cover this category of keratins. Pending their characterization at the gene/protein and tissue expression level, any new members of this type shall be added chronologically, independent of their nature as epithelial or hair keratins. Presently, there are only two keratins that fulfill these criteria (Table III). K41 represents a hair keratin that is differentially expressed in chimpanzee and gorilla hairs, whereas the human orthologue is a pseudogene (Winter et al., 2001). Similarly, K42 is the new designation for the recently described mouse and rat epithelial keratin K17n that is expressed mainly in nail tissue (Tong and Coulombe, 2004). The orthologous gene in humans is also a pseudogene (Troyanovsky et al.1992; Hesse et al., 2004; Rogers et al., 2004; Tong and Coulombe, 2004). Another candidate for this group is the keratin currently called Ka11, which is a rat keratin whose gene is nonfunctional in mice and absent from the human genome (Hesse et al., 2004).
| New nomenclature for type II keratins Human epithelial keratins |
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Although the completion of sequencing and analysis of the human type I keratin gene domain did not reveal any new keratin genes, that of the type II keratin gene domain led to the detection of four hitherto unknown genes whose encoded proteins had previously been designated K1b, K5b, K6l, and Kb20 (Hesse et al., 2001, 2004; Rogers et al. 2005; Table IV, column 1). Although there is only limited expression data available for K5b, K6l, and Kb20 (Rogers et al., 2005), keratin K1b has recently been demonstrated to be specifically expressed in eccrine sweat glands (Langbein et al., 2005). In the new nomenclature, these keratins are designated K77K80 (Table IV, column 4). Collectively, K1K8 and K71K80 cover the twenty human type II epithelial keratins (Tables I and II).
Human hair keratins
Somewhat by design, the direct continuation of the numbering of the six human hair keratins (Table I), i.e., K81K86, led to last digit matching between the old (Table IV, column 1) and the new nomenclature (Table IV, column 4), so that this kind of "aide-mémoire" exists for both types of human hair keratins.
Nonhuman epithelial/hair keratins
Unlike the situation for type I keratins, there are currently no type II keratins in this category. According to a recent study, putative mouse and rat candidate genes might be located in a region syntenic to the KRT6B, KRT6C, and KRT6A subcluster in the human genome (Hesse et al., 2004). The numbering allocated to such potential keratins ranges from 87 to 120 (Table II), thus, covering approximately the same range as that assigned to their type I counterparts.
| New nomenclature for human type I and II pseudogene |
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The type I keratin gene domain contains two hair keratin and three epithelial keratin pseudogenes (Table III and Fig. 1). Two of them, the hair keratin pseudogene KRT41P and the epithelial keratin pseudogene KRT42P, possess active gene counterparts in other species and have already been named accordingly. The remaining three genes were designated KRT221PKRT223P (Table III, column 5).
It should be emphasized that in addition to the aforementioned type I and II keratin pseudogenes in the keratin gene domains on chromosomes 17 and 121, there are at least 61 processed pseudogenes for the type II keratin K8 and 77 for the type I keratin K18, which are dispersed throughout the human genome. Moreover, there are five processed pseudogenes for the type I keratin K19, which are single pseudogenes located on chromosomes 4, 6, and 10, with two pseudogenes located on chromosome 12. None of these contains an intact reading frame. Furthermore, the terminal segment on the human type I keratin gene domain spanning genes KRT14, KRT16, KRT17, and KRT42P (Fig. 1) is inserted four times into different regions of chromosome 17. This gives rise to three unprocessed pseudogenes for K14 and K16, and four for K17, as well as four KRT42P pseudogenes, which are all assumed to be nonfunctional (Hesse et al., 2001, 2004). The decision as to how these pseudogenes will be included into the respective lists of type I and II keratin pseudogenes will be left to the HGNC.
| Concluding remarks |
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| Acknowledgments |
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Submitted: 29 March 2006
Accepted: 14 June 2006
| References |
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