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<title>The Journal of Cell Biology</title>
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<link>http://www.jcb.org</link>
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<item rdf:about="http://www.jcb.org/cgi/content/short/183/1/37?rss=1">
<title><![CDATA[AP-2 factors act in concert with Notch to orchestrate terminal differentiation in skin epidermis]]></title>
<link>http://www.jcb.org/cgi/content/short/183/1/37?rss=1</link>
<description><![CDATA[
<p>The mechanisms by which mammalian epidermal stem cells cease to proliferate and embark upon terminal differentiation are still poorly understood. By conditionally ablating two highly expressed transcription factors, <I>AP-2</I> and <I>AP-2</I>, we unmasked functional redundancies and discovered an essential role for AP-2s in the process. In vivo and in vitro, AP-2 deficiency is accompanied by surprisingly minimal changes in basal gene expression but severely perturbed terminal differentiation and suppression of additional transcription factors and structural genes involved. In dissecting the underlying molecular pathways, we uncover parallel pathways involving AP-2 and Notch signaling, which converge to govern <I>CCAAT/enhancer binding protein</I> genes and orchestrate the transition from basal proliferation to suprabasal differentiation. Finally, we extend the striking similarities in compromising either Notch signaling or AP-2/AP-2 in developing skin to that in postnatal skin, where all hair follicles and sebaceous gland differentiation are also repressed and overt signs of premalignant conversion emerge.</p>
]]></description>
<dc:creator><![CDATA[Wang, X., Pasolli, H. A., Williams, T., Fuchs, E.]]></dc:creator>
<dc:date>2008-10-06</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200804030</dc:identifier>
<dc:title><![CDATA[AP-2 factors act in concert with Notch to orchestrate terminal differentiation in skin epidermis]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>1</prism:number>
<prism:volume>183</prism:volume>
<prism:endingPage>48</prism:endingPage>
<prism:publicationDate>2008-10-06</prism:publicationDate>
<prism:startingPage>37</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/183/1/49?rss=1">
<title><![CDATA[Cdk2 and Pin1 negatively regulate the transcriptional corepressor SMRT]]></title>
<link>http://www.jcb.org/cgi/content/short/183/1/49?rss=1</link>
<description><![CDATA[
<p>Silencing mediator for retinoic acid and thyroid hormone receptor (SMRT) is a transcriptional corepressor that participates in diverse signaling pathways and human diseases. However, regulation of SMRT stability remains largely unexplored. We show that the peptidyl-prolyl isomerase Pin1 interacts with SMRT both in vitro and in mammalian cells. This interaction requires the WW domain of Pin1 and SMRT phosphorylation. Pin1 regulates SMRT protein stability, thereby affecting SMRT-dependent transcriptional repression. SMRT phosphorylation at multiple sites is required for Pin1 interaction, and these sites can be phosphorylated by Cdk2, which interacts with SMRT. Cdk2-mediated phosphorylation of SMRT is required for Pin1 binding and decreases SMRT stability, whereas mutation of these phosphorylation sites abrogates Pin1 binding and stabilizes SMRT. Finally, decreases in SMRT stability occur in response to the activation of Her2/Neu/ErbB2, and this receptor functions upstream of both Pin1 and Cdk2 in the signaling cascade that regulates SMRT stability and cellular response to tamoxifen.</p>
]]></description>
<dc:creator><![CDATA[Stanya, K. J., Liu, Y., Means, A. R., Kao, H.-Y.]]></dc:creator>
<dc:date>2008-10-06</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200806172</dc:identifier>
<dc:title><![CDATA[Cdk2 and Pin1 negatively regulate the transcriptional corepressor SMRT]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>1</prism:number>
<prism:volume>183</prism:volume>
<prism:endingPage>61</prism:endingPage>
<prism:publicationDate>2008-10-06</prism:publicationDate>
<prism:startingPage>49</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/183/1/63?rss=1">
<title><![CDATA[Grapes(Chk1) prevents nuclear CDK1 activation by delaying cyclin B nuclear accumulation]]></title>
<link>http://www.jcb.org/cgi/content/short/183/1/63?rss=1</link>
<description><![CDATA[
<p>Entry into mitosis is characterized by a dramatic remodeling of nuclear and cytoplasmic compartments. These changes are driven by cyclin-dependent kinase 1 (CDK1) activity, yet how cytoplasmic and nuclear CDK1 activities are coordinated is unclear. We injected cyclin B (CycB) into <I>Drosophila melanogaster</I> embryos during interphase of syncytial cycles and monitored effects on cytoplasmic and nuclear mitotic events. In untreated embryos or embryos arrested in interphase with a protein synthesis inhibitor, injection of CycB accelerates nuclear envelope breakdown and mitotic remodeling of the cytoskeleton. Upon activation of the Grapes(checkpoint kinase 1) (Grp(Chk1))-dependent S-phase checkpoint, increased levels of CycB drives cytoplasmic but not nuclear mitotic events. Grp(Chk1) prevents nuclear CDK1 activation by delaying CycB nuclear accumulation through Wee1-dependent and independent mechanisms.</p>
]]></description>
<dc:creator><![CDATA[Royou, A., McCusker, D., Kellogg, D. R., Sullivan, W.]]></dc:creator>
<dc:date>2008-10-06</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801153</dc:identifier>
<dc:title><![CDATA[Grapes(Chk1) prevents nuclear CDK1 activation by delaying cyclin B nuclear accumulation]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>1</prism:number>
<prism:volume>183</prism:volume>
<prism:endingPage>75</prism:endingPage>
<prism:publicationDate>2008-10-06</prism:publicationDate>
<prism:startingPage>63</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/183/1/77?rss=1">
<title><![CDATA[Autonomy and robustness of translocation through the nuclear pore complex: a single-molecule study]]></title>
<link>http://www.jcb.org/cgi/content/short/183/1/77?rss=1</link>
<description><![CDATA[
<p>All molecular traffic between nucleus and cytoplasm occurs via the nuclear pore complex (NPC) within the nuclear envelope. In this study we analyzed the interactions of the nuclear transport receptors kap2, kap&beta;1, kap&beta;1N44, and kap&beta;2, and the model transport substrate, BSA-NLS, with NPCs to determine binding sites and kinetics using single-molecule microscopy in living cells. Recombinant transport receptors and BSA-NLS were fluorescently labeled by AlexaFluor 488, and microinjected into the cytoplasm of living HeLa cells expressing POM121-GFP as a nuclear pore marker. After bleaching the dominant GFP fluorescence the interactions of the microinjected molecules could be studied using video microscopy with a time resolution of 5 ms, achieving a colocalization precision of 30 nm. These measurements allowed defining the interaction sites with the NPCs with an unprecedented precision, and the comparison of the interaction kinetics with previous in vitro measurements revealed new insights into the translocation mechanism.</p>
]]></description>
<dc:creator><![CDATA[Dange, T., Grunwald, D., Grunwald, A., Peters, R., Kubitscheck, U.]]></dc:creator>
<dc:date>2008-10-06</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200806173</dc:identifier>
<dc:title><![CDATA[Autonomy and robustness of translocation through the nuclear pore complex: a single-molecule study]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>1</prism:number>
<prism:volume>183</prism:volume>
<prism:endingPage>86</prism:endingPage>
<prism:publicationDate>2008-10-06</prism:publicationDate>
<prism:startingPage>77</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/183/1/87?rss=1">
<title><![CDATA[The role of GTP binding and hydrolysis at the atToc159 preprotein receptor during protein import into chloroplasts]]></title>
<link>http://www.jcb.org/cgi/content/short/183/1/87?rss=1</link>
<description><![CDATA[
<p>The majority of nucleus-encoded chloroplast proteins are targeted to the organelle by direct binding to two membrane-bound GTPase receptors, Toc34 and Toc159. The GTPase activities of the receptors are implicated in two key import activities, preprotein binding and driving membrane translocation, but their precise functions have not been defined. We use a combination of in vivo and in vitro approaches to study the role of the Toc159 receptor in the import reaction. We show that atToc159-A864R, a receptor with reduced GTPase activity, can fully complement a lethal insertion mutation in the ATTOC159 gene. Surprisingly, the atToc159-A864R receptor increases the rate of protein import relative to wild-type receptor in isolated chloroplasts by stabilizing the formation of a GTP-dependent preprotein binding intermediate. These data favor a model in which the atToc159 receptor acts as part of a GTP-regulated switch for preprotein recognition at the TOC translocon.</p>
]]></description>
<dc:creator><![CDATA[Wang, F., Agne, B., Kessler, F., Schnell, D. J.]]></dc:creator>
<dc:date>2008-10-06</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200803034</dc:identifier>
<dc:title><![CDATA[The role of GTP binding and hydrolysis at the atToc159 preprotein receptor during protein import into chloroplasts]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>1</prism:number>
<prism:volume>183</prism:volume>
<prism:endingPage>99</prism:endingPage>
<prism:publicationDate>2008-10-06</prism:publicationDate>
<prism:startingPage>87</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/183/1/101?rss=1">
<title><![CDATA[Akt inhibition promotes autophagy and sensitizes PTEN-null tumors to lysosomotropic agents]]></title>
<link>http://www.jcb.org/cgi/content/short/183/1/101?rss=1</link>
<description><![CDATA[
<p>Although Akt is known as a survival kinase, inhibitors of the phosphatidylinositol 3-kinase (PI3K)&ndash;Akt pathway do not always induce substantial apoptosis. We show that silencing Akt1 alone, or any combination of Akt isoforms, can suppress the growth of tumors established from phosphatase and tensin homologue&ndash;null human cancer cells. Although these findings indicate that Akt is essential for tumor maintenance, most tumors eventually rebound. Akt knockdown or inactivation with small molecule inhibitors did not induce significant apoptosis but rather markedly increased autophagy. Further treatment with the lysosomotropic agent chloroquine caused accumulation of abnormal autophagolysosomes and reactive oxygen species, leading to accelerated cell death in vitro and complete tumor remission in vivo. Cell death was also promoted when Akt inhibition was combined with the vacuolar H<sup>+</sup>&ndash;adenosine triphosphatase inhibitor bafilomycin A1 or with cathepsin inhibition. These results suggest that blocking lysosomal degradation can be detrimental to cancer cell survival when autophagy is activated, providing rationale for a new therapeutic approach to enhancing the anticancer efficacy of PI3K&ndash;Akt pathway inhibition.</p>
]]></description>
<dc:creator><![CDATA[Degtyarev, M., De Maziere, A., Orr, C., Lin, J., Lee, B. B., Tien, J. Y., Prior, W. W., van Dijk, S., Wu, H., Gray, D. C., Davis, D. P., Stern, H. M., Murray, L. J., Hoeflich, K. P., Klumperman, J., Friedman, L. S., Lin, K.]]></dc:creator>
<dc:date>2008-10-06</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801099</dc:identifier>
<dc:title><![CDATA[Akt inhibition promotes autophagy and sensitizes PTEN-null tumors to lysosomotropic agents]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>1</prism:number>
<prism:volume>183</prism:volume>
<prism:endingPage>116</prism:endingPage>
<prism:publicationDate>2008-10-06</prism:publicationDate>
<prism:startingPage>101</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/183/1/117?rss=1">
<title><![CDATA[Notch1 signaling stimulates proliferation of immature cardiomyocytes]]></title>
<link>http://www.jcb.org/cgi/content/short/183/1/117?rss=1</link>
<description><![CDATA[
<p>The identification of the molecular mechanisms controlling cardiomyocyte proliferation during the embryonic, fetal, and early neonatal life appears of paramount interest in regard to exploiting this information to promote cardiac regeneration. Here, we show that the proliferative potential of neonatal rat cardiomyocytes is powerfully stimulated by the sustained activation of the Notch pathway. We found that Notch1 is expressed in proliferating ventricular immature cardiac myocytes (ICMs) both in vitro and in vivo, and that the number of Notch1-positive cells in the heart declines with age. Notch1 expression in ICMs paralleled the expression of its Jagged1 ligand on non-myocyte supporting cells. The inhibition of Notch signaling in ICMs blocked their proliferation and induced apoptosis; in contrast, its activation by Jagged1 or by the constitutive expression of its activated form using an adeno-associated virus markedly stimulated proliferative signaling and promoted ICM expansion. Maintenance or reactivation of Notch signaling in cardiac myocytes might represent an interesting target for innovative regenerative therapy.</p>
]]></description>
<dc:creator><![CDATA[Collesi, C., Zentilin, L., Sinagra, G., Giacca, M.]]></dc:creator>
<dc:date>2008-10-06</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200806091</dc:identifier>
<dc:title><![CDATA[Notch1 signaling stimulates proliferation of immature cardiomyocytes]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>1</prism:number>
<prism:volume>183</prism:volume>
<prism:endingPage>128</prism:endingPage>
<prism:publicationDate>2008-10-06</prism:publicationDate>
<prism:startingPage>117</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/183/1/129?rss=1">
<title><![CDATA[Notch activates cell cycle reentry and progression in quiescent cardiomyocytes]]></title>
<link>http://www.jcb.org/cgi/content/short/183/1/129?rss=1</link>
<description><![CDATA[
<p>The inability of heart muscle to regenerate by replication of existing cardiomyocytes has engendered considerable interest in identifying developmental or other stimuli capable of sustaining the proliferative capacity of immature cardiomyocytes or stimulating division of postmitotic cardiomyocytes. Here, we demonstrate that reactivation of Notch signaling causes embryonic stem cell&ndash;derived and neonatal ventricular cardiomyocytes to enter the cell cycle. The proliferative response of neonatal ventricular cardiomyocytes declines as they mature, such that late activation of Notch triggers the DNA damage checkpoint and G2/M interphase arrest. Notch induces recombination signal-binding protein 1 for J (RBP-J)-dependent expression of cyclin D1 but, unlike other inducers, also shifts its subcellular distribution from the cytosol to the nucleus. Nuclear localization of cyclin D1 is independent of RBP-J. Thus, the influence of Notch on nucleocytoplasmic localization of cyclin D1 is an unanticipated property of the Notch intracellular domain that is likely to regulate the cell cycle in multiple contexts, including tumorigenesis as well as cardiogenesis.</p>
]]></description>
<dc:creator><![CDATA[Campa, V. M., Gutierrez-Lanza, R., Cerignoli, F., Diaz-Trelles, R., Nelson, B., Tsuji, T., Barcova, M., Jiang, W., Mercola, M.]]></dc:creator>
<dc:date>2008-10-06</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200806104</dc:identifier>
<dc:title><![CDATA[Notch activates cell cycle reentry and progression in quiescent cardiomyocytes]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>1</prism:number>
<prism:volume>183</prism:volume>
<prism:endingPage>141</prism:endingPage>
<prism:publicationDate>2008-10-06</prism:publicationDate>
<prism:startingPage>129</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/183/1/143?rss=1">
<title><![CDATA[Rab-coupling protein coordinates recycling of {alpha}5{beta}1 integrin and EGFR1 to promote cell migration in 3D microenvironments]]></title>
<link>http://www.jcb.org/cgi/content/short/183/1/143?rss=1</link>
<description><![CDATA[
<p>Here we show that blocking the adhesive function of v&beta;3 integrin with soluble RGD ligands, such as osteopontin or cilengitide, promoted association of Rab-coupling protein (RCP) with 5&beta;1 integrin and drove RCP-dependent recycling of 5&beta;1 to the plasma membrane and its mobilization to dynamic ruffling protrusions at the cell front. These RCP-driven changes in 5&beta;1 trafficking led to acquisition of rapid/random movement on two-dimensional substrates and to a marked increase in fibronectin-dependent migration of tumor cells into three-dimensional matrices. Recycling of 5&beta;1 integrin did not affect its regulation or ability to form adhesive bonds with substrate fibronectin. Instead, 5&beta;1 controlled the association of EGFR1 with RCP to promote the coordinate recycling of these two receptors. This modified signaling downstream of EGFR1 to increase its autophosphorylation and activation of the proinvasive kinase PKB/Akt. We conclude that RCP provides a scaffold that promotes the physical association and coordinate trafficking of 5&beta;1 and EGFR1 and that this drives migration of tumor cells into three-dimensional matrices.</p>
]]></description>
<dc:creator><![CDATA[Caswell, P. T., Chan, M., Lindsay, A. J., McCaffrey, M. W., Boettiger, D., Norman, J. C.]]></dc:creator>
<dc:date>2008-10-06</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200804140</dc:identifier>
<dc:title><![CDATA[Rab-coupling protein coordinates recycling of {alpha}5{beta}1 integrin and EGFR1 to promote cell migration in 3D microenvironments]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>1</prism:number>
<prism:volume>183</prism:volume>
<prism:endingPage>155</prism:endingPage>
<prism:publicationDate>2008-10-06</prism:publicationDate>
<prism:startingPage>143</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/183/1/157?rss=1">
<title><![CDATA[Tre1 GPCR initiates germ cell transepithelial migration by regulating Drosophila melanogaster E-cadherin]]></title>
<link>http://www.jcb.org/cgi/content/short/183/1/157?rss=1</link>
<description><![CDATA[
<p>Despite significant progress in identifying the guidance pathways that control cell migration, how a cell starts to move within an intact organism, acquires motility, and loses contact with its neighbors is poorly understood. We show that activation of the G protein&ndash;coupled receptor (GPCR) trapped in endoderm 1 (Tre1) directs the redistribution of the G protein G&beta; as well as adherens junction proteins and Rho guanosine triphosphatase from the cell periphery to the lagging tail of germ cells at the onset of <I>Drosophila melanogaster</I> germ cell migration. Subsequently, Tre1 activity triggers germ cell dispersal and orients them toward the midgut for directed transepithelial migration. A transition toward invasive migration is also a prerequisite for metastasis formation, which often correlates with down-regulation of adhesion proteins. We show that uniform down-regulation of E-cadherin causes germ cell dispersal but is not sufficient for transepithelial migration in the absence of Tre1. Our findings therefore suggest a new mechanism for GPCR function that links cell polarity, modulation of cell adhesion, and invasion.</p>
]]></description>
<dc:creator><![CDATA[Kunwar, P. S., Sano, H., Renault, A. D., Barbosa, V., Fuse, N., Lehmann, R.]]></dc:creator>
<dc:date>2008-10-06</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200807049</dc:identifier>
<dc:title><![CDATA[Tre1 GPCR initiates germ cell transepithelial migration by regulating Drosophila melanogaster E-cadherin]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>1</prism:number>
<prism:volume>183</prism:volume>
<prism:endingPage>168</prism:endingPage>
<prism:publicationDate>2008-10-06</prism:publicationDate>
<prism:startingPage>157</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/1017?rss=1">
<title><![CDATA[The mouth of a dense-core vesicle opens and closes in a concerted action regulated by calcium and amphiphysin]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/1017?rss=1</link>
<description><![CDATA[
<p>Secretion of hormones and peptides by neuroendocrine cells occurs through fast and slow modes of vesicle fusion but the mechanics of these processes are not understood. We used interference reflection microscopy to monitor deformations of the membrane surface and found that both modes of fusion involve the tightly coupled dilation and constriction of the vesicle. The rate of opening is calcium dependent and occurs rapidly at concentrations &lt;5 &micro;M. The fast mode of fusion is blocked selectively by a truncation mutant of amphiphysin. Vesicles do not collapse when fusion is triggered by strontium, rather they remain locked open and membrane scission is blocked. In contrast, constriction of the vesicle opening continues when endocytosis is blocked by inhibiting the function of dynamin. Thus, fast and slow modes of fusion involve similar membrane deformations and vesicle closure can be uncoupled from membrane scission. Regulation of these processes by calcium and amphiphysin may provide a mechanism for controlling the release of vesicle contents.</p>
]]></description>
<dc:creator><![CDATA[Llobet, A., Wu, M., Lagnado, L.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200807034</dc:identifier>
<dc:title><![CDATA[The mouth of a dense-core vesicle opens and closes in a concerted action regulated by calcium and amphiphysin]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1028</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1017</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/6/1083?rss=1">
<title><![CDATA[Association between active genes occurs at nuclear speckles and is modulated by chromatin environment]]></title>
<link>http://www.jcb.org/cgi/content/short/182/6/1083?rss=1</link>
<description><![CDATA[
<p>Genes on different chromosomes can be spatially associated in the nucleus in several transcriptional and regulatory situations; however, the functional significance of such associations remains unclear. Using human erythropoiesis as a model, we show that five cotranscribed genes, which are found on four different chromosomes, associate with each other at significant but variable frequencies. Those genes most frequently in association lie in decondensed stretches of chromatin. By replacing the mouse -globin gene cluster in situ with its human counterpart, we demonstrate a direct effect of the regional chromatin environment on the frequency of association, whereas nascent transcription from the human -globin gene appears unaffected. We see no evidence that cotranscribed erythroid genes associate at shared transcription foci, but we do see stochastic clustering of active genes around common nuclear SC35-enriched speckles (hence the apparent nonrandom association between genes). Thus, association between active genes may result from their location on decondensed chromatin that enables clustering around common nuclear speckles.</p>
]]></description>
<dc:creator><![CDATA[Brown, J. M., Green, J., das Neves, R. P., Wallace, H. A.C., Smith, A. J.H., Hughes, J., Gray, N., Taylor, S., Wood, W. G., Higgs, D. R., Iborra, F. J., Buckle, V. J.]]></dc:creator>
<dc:date>2008-09-22</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200803174</dc:identifier>
<dc:title><![CDATA[Association between active genes occurs at nuclear speckles and is modulated by chromatin environment]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>6</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1097</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1083</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/6/1099?rss=1">
<title><![CDATA[Regulation of Sli15/INCENP, kinetochore, and Cdc14 phosphatase functions by the ribosome biogenesis protein Utp7]]></title>
<link>http://www.jcb.org/cgi/content/short/182/6/1099?rss=1</link>
<description><![CDATA[
<p>The Sli15&ndash;Ipl1&ndash;Bir1 chromosomal passenger complex is essential for proper kinetochore&ndash;microtubule attachment and spindle stability in the budding yeast <I>Saccharomyces cerevisiae</I>. During early anaphase, release of the Cdc14 protein phosphatase from the nucleolus leads to the dephosphorylation of Sli15 and redistribution of this complex from kinetochores to the spindle. We show here that the predominantly nucleolar ribosome biogenesis protein Utp7 is also present at kinetochores and is required for normal organization of kinetochore proteins and proper chromosome segregation. Utp7 associates with and regulates the localization of Sli15 and Cdc14. Before anaphase onset, it prevents the premature nucleolar release of Cdc14 and the premature concentration of Sli15 on the spindle. Furthermore, Utp7 can regulate the localization and phosphorylation status of Sli15 independent of its effect on Cdc14 function. Thus, Utp7 is a multifunctional protein that plays essential roles in the vital cellular processes of ribosome biogenesis, chromosome segregation, and cell cycle control.</p>
]]></description>
<dc:creator><![CDATA[Jwa, M., Kim, J.-h., Chan, C. S.M.]]></dc:creator>
<dc:date>2008-09-22</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200802085</dc:identifier>
<dc:title><![CDATA[Regulation of Sli15/INCENP, kinetochore, and Cdc14 phosphatase functions by the ribosome biogenesis protein Utp7]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>6</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1111</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1099</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/6/1113?rss=1">
<title><![CDATA[Ero1L, a thiol oxidase, is required for Notch signaling through cysteine bridge formation of the Lin12-Notch repeats in Drosophila melanogaster]]></title>
<link>http://www.jcb.org/cgi/content/short/182/6/1113?rss=1</link>
<description><![CDATA[
<p>Notch-mediated cell&ndash;cell communication regulates numerous developmental processes and cell fate decisions. Through a mosaic genetic screen in <I>Drosophila melanogaster</I>, we identified a role in Notch signaling for a conserved thiol oxidase, endoplasmic reticulum (ER) oxidoreductin 1&ndash;like (Ero1L). Although Ero1L is reported to play a widespread role in protein folding in yeast, in flies <I>Ero1L</I> mutant clones show specific defects in lateral inhibition and inductive signaling, two characteristic processes regulated by Notch signaling. <I>Ero1L</I> mutant cells accumulate high levels of Notch protein in the ER and induce the unfolded protein response, suggesting that Notch is misfolded and fails to be exported from the ER. Biochemical assays demonstrate that Ero1L is required for formation of disulfide bonds of three Lin12-Notch repeats (LNRs) present in the extracellular domain of Notch. These LNRs are unique to the Notch family of proteins. Therefore, we have uncovered an unexpected requirement for Ero1L in the maturation of the Notch receptor.</p>
]]></description>
<dc:creator><![CDATA[Tien, A.-C., Rajan, A., Schulze, K. L., Ryoo, H. D., Acar, M., Steller, H., Bellen, H. J.]]></dc:creator>
<dc:date>2008-09-22</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200805001</dc:identifier>
<dc:title><![CDATA[Ero1L, a thiol oxidase, is required for Notch signaling through cysteine bridge formation of the Lin12-Notch repeats in Drosophila melanogaster]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>6</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1125</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1113</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/6/1127?rss=1">
<title><![CDATA[Effector caspase Dcp-1 and IAP protein Bruce regulate starvation-induced autophagy during Drosophila melanogaster oogenesis]]></title>
<link>http://www.jcb.org/cgi/content/short/182/6/1127?rss=1</link>
<description><![CDATA[
<p>A complex relationship exists between autophagy and apoptosis, but the regulatory mechanisms underlying their interactions are largely unknown. We conducted a systematic study of <I>Drosophila melanogaster</I> cell death&ndash;related genes to determine their requirement in the regulation of starvation-induced autophagy. We discovered that six cell death genes&mdash;<I>death caspase-1</I> (<I>Dcp-1</I>), <I>hid</I>, <I>Bruce</I>, <I>Buffy</I>, <I>debcl</I>, and <I>p53</I>&mdash;as well as <I>Ras&ndash;Raf&ndash;mitogen activated protein kinase</I> signaling pathway components had a role in autophagy regulation in <I>D. melanogaster</I> cultured cells. During <I>D. melanogaster</I> oogenesis, we found that autophagy is induced at two nutrient status checkpoints: germarium and mid-oogenesis. At these two stages, the effector caspase Dcp-1 and the inhibitor of apoptosis protein Bruce function to regulate both autophagy and starvation-induced cell death. Mutations in <I>Atg1</I> and <I>Atg7</I> resulted in reduced DNA fragmentation in degenerating midstage egg chambers but did not appear to affect nuclear condensation, which indicates that autophagy contributes in part to cell death in the ovary. Our study provides new insights into the molecular mechanisms that coordinately regulate autophagic and apoptotic events in vivo.</p>
]]></description>
<dc:creator><![CDATA[Hou, Y.-C. C., Chittaranjan, S., Barbosa, S. G., McCall, K., Gorski, S. M.]]></dc:creator>
<dc:date>2008-09-22</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200712091</dc:identifier>
<dc:title><![CDATA[Effector caspase Dcp-1 and IAP protein Bruce regulate starvation-induced autophagy during Drosophila melanogaster oogenesis]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>6</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1139</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1127</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/6/1141?rss=1">
<title><![CDATA[Efficient termination of vacuolar Rab GTPase signaling requires coordinated action by a GAP and a protein kinase]]></title>
<link>http://www.jcb.org/cgi/content/short/182/6/1141?rss=1</link>
<description><![CDATA[
<p>Rab guanosine triphosphatases (GTPases) are pivotal regulators of membrane identity and dynamics, but the in vivo pathways that control Rab signaling are poorly defined. Here, we show that the GTPase-activating protein Gyp7 inactivates the yeast vacuole Rab Ypt7 in vivo. To efficiently terminate Ypt7 signaling, Gyp7 requires downstream assistance from an inhibitory casein kinase I, Yck3. Yck3 mediates phosphorylation of at least two Ypt7 signaling targets: a tether, the Vps-C/homotypic fusion and vacuole protein sorting (HOPS) subunit Vps41, and a SNARE, Vam3. Phosphorylation of both substrates is opposed by Ypt7-guanosine triphosphate (GTP). We further demonstrate that Ypt7 binds not one but two Vps-C/HOPS subunits: Vps39, a putative Ypt7 nucleotide exchange factor, and Vps41. Gyp7-stimulated GTP hydrolysis on Ypt7 therefore appears to trigger both passive termination of Ypt7 signaling and active kinase-mediated inhibition of Ypt7's downstream targets. We propose that signal propagation through the Ypt7 pathway is controlled by integrated feedback and feed-forward loops. In this model, Yck3 enforces a requirement for the activated Rab in docking and fusion.</p>
]]></description>
<dc:creator><![CDATA[Brett, C. L., Plemel, R. L., Lobinger, B. T., Vignali, M., Fields, S., Merz, A. J.]]></dc:creator>
<dc:date>2008-09-22</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801001</dc:identifier>
<dc:title><![CDATA[Efficient termination of vacuolar Rab GTPase signaling requires coordinated action by a GAP and a protein kinase]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>6</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1151</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1141</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/6/1153?rss=1">
<title><![CDATA[Regulation of caveolin-1 membrane trafficking by the Na/K-ATPase]]></title>
<link>http://www.jcb.org/cgi/content/short/182/6/1153?rss=1</link>
<description><![CDATA[
<p>Here, we show that the Na/K-ATPase interacts with caveolin-1 (Cav1) and regulates Cav1 trafficking. Graded knockdown of Na/K-ATPase decreases the plasma membrane pool of Cav1, which results in a significant reduction in the number of caveolae on the cell surface. These effects are independent of the pumping function of Na/K-ATPase, and instead depend on interaction between Na/K-ATPase and Cav1 mediated by an N-terminal caveolin-binding motif within the ATPase 1 subunit. Moreover, knockdown of the Na/K-ATPase increases basal levels of active Src and stimulates endocytosis of Cav1 from the plasma membrane. Microtubule-dependent long-range directional trafficking in Na/K-ATPase&ndash;depleted cells results in perinuclear accumulation of Cav1-positive vesicles. Finally, Na/K-ATPase knockdown has no effect on processing or exit of Cav1 from the Golgi. Thus, the Na/K-ATPase regulates Cav1 endocytic trafficking and stabilizes the Cav1 plasma membrane pool.</p>
]]></description>
<dc:creator><![CDATA[Cai, T., Wang, H., Chen, Y., Liu, L., Gunning, W. T, Quintas, L. E. M., Xie, Z.-J.]]></dc:creator>
<dc:date>2008-09-22</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200712022</dc:identifier>
<dc:title><![CDATA[Regulation of caveolin-1 membrane trafficking by the Na/K-ATPase]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>6</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1169</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1153</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/6/1171?rss=1">
<title><![CDATA[Myosin II has distinct functions in PNS and CNS myelin sheath formation]]></title>
<link>http://www.jcb.org/cgi/content/short/182/6/1171?rss=1</link>
<description><![CDATA[
<p>The myelin sheath forms by the spiral wrapping of a glial membrane around the axon. The mechanisms responsible for this process are unknown but are likely to involve coordinated changes in the glial cell cytoskeleton. We have found that inhibition of myosin II, a key regulator of actin cytoskeleton dynamics, has remarkably opposite effects on myelin formation by Schwann cells (SC) and oligodendrocytes (OL). Myosin II is necessary for initial interactions between SC and axons, and its inhibition or down-regulation impairs their ability to segregate axons and elongate along them, preventing the formation of a 1:1 relationship, which is critical for peripheral nervous system myelination. In contrast, OL branching, differentiation, and myelin formation are potentiated by inhibition of myosin II. Thus, by controlling the spatial and localized activation of actin polymerization, myosin II regulates SC polarization and OL branching, and by extension their ability to form myelin. Our data indicate that the mechanisms regulating myelination in the peripheral and central nervous systems are distinct.</p>
]]></description>
<dc:creator><![CDATA[Wang, H., Tewari, A., Einheber, S., Salzer, J. L., Melendez-Vasquez, C. V.]]></dc:creator>
<dc:date>2008-09-22</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200802091</dc:identifier>
<dc:title><![CDATA[Myosin II has distinct functions in PNS and CNS myelin sheath formation]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>6</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1184</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1171</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/6/1185?rss=1">
<title><![CDATA[NCAM induces CaMKII{alpha}-mediated RPTP{alpha} phosphorylation to enhance its catalytic activity and neurite outgrowth]]></title>
<link>http://www.jcb.org/cgi/content/short/182/6/1185?rss=1</link>
<description><![CDATA[
<p>Receptor protein tyrosine phosphatase  (RPTP) phosphatase activity is required for intracellular signaling cascades that are activated in motile cells and growing neurites. Little is known, however, about mechanisms that coordinate RPTP activity with cell behavior. We show that clustering of neural cell adhesion molecule (NCAM) at the cell surface is coupled to an increase in serine phosphorylation and phosphatase activity of RPTP. NCAM associates with T- and L-type voltage-dependent Ca<sup>2+</sup> channels, and NCAM clustering at the cell surface results in Ca<sup>2+</sup> influx via these channels and activation of NCAM-associated calmodulin-dependent protein kinase II (CaMKII). Clustering of NCAM promotes its redistribution to lipid rafts and the formation of a NCAM&ndash;RPTP&ndash;CaMKII complex, resulting in serine phosphorylation of RPTP by CaMKII. Overexpression of RPTP with mutated Ser180 and Ser204 interferes with NCAM-induced neurite outgrowth, which indicates that neurite extension depends on NCAM-induced up-regulation of RPTP activity. Thus, we reveal a novel function for a cell adhesion molecule in coordination of cell behavior with intracellular phosphatase activity.</p>
]]></description>
<dc:creator><![CDATA[Bodrikov, V., Sytnyk, V., Leshchyns'ka, I., den Hertog, J., Schachner, M.]]></dc:creator>
<dc:date>2008-09-22</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200803045</dc:identifier>
<dc:title><![CDATA[NCAM induces CaMKII{alpha}-mediated RPTP{alpha} phosphorylation to enhance its catalytic activity and neurite outgrowth]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>6</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1200</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1185</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/6/1201?rss=1">
<title><![CDATA[Laminins promote postsynaptic maturation by an autocrine mechanism at the neuromuscular junction]]></title>
<link>http://www.jcb.org/cgi/content/short/182/6/1201?rss=1</link>
<description><![CDATA[
<p>A prominent feature of synaptic maturation at the neuromuscular junction (NMJ) is the topological transformation of the acetylcholine receptor (AChR)-rich postsynaptic membrane from an ovoid plaque into a complex array of branches. We show here that laminins play an autocrine role in promoting this transformation. Laminins containing the 4, 5, and &beta;2 subunits are synthesized by muscle fibers and concentrated in the small portion of the basal lamina that passes through the synaptic cleft at the NMJ. Topological maturation of AChR clusters was delayed in targeted mutant mice lacking laminin 5 and arrested in mutants lacking both 4 and 5. Analysis of chimeric laminins in vivo and of mutant myotubes cultured aneurally demonstrated that the laminins act directly on muscle cells to promote postsynaptic maturation. Immunohistochemical studies in vivo and in vitro along with analysis of targeted mutants provide evidence that laminin-dependent aggregation of dystroglycan in the postsynaptic membrane is a key step in synaptic maturation. Another synaptically concentrated laminin receptor, Bcam, is dispensable. Together with previous studies implicating laminins as organizers of presynaptic differentiation, these results show that laminins coordinate post- with presynaptic maturation.</p>
]]></description>
<dc:creator><![CDATA[Nishimune, H., Valdez, G., Jarad, G., Moulson, C. L., Muller, U., Miner, J. H., Sanes, J. R.]]></dc:creator>
<dc:date>2008-09-22</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200805095</dc:identifier>
<dc:title><![CDATA[Laminins promote postsynaptic maturation by an autocrine mechanism at the neuromuscular junction]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>6</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1215</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1201</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/6/1217?rss=1">
<title><![CDATA[EPB41L5 functions to post-transcriptionally regulate cadherin and integrin during epithelial-mesenchymal transition]]></title>
<link>http://www.jcb.org/cgi/content/short/182/6/1217?rss=1</link>
<description><![CDATA[
<p>EPB41L5 belongs to the band 4.1 superfamily. We investigate here the involvement of EPB41L5 in epithelial&ndash;mesenchymal transition (EMT) during mouse gastrulation. EPB41L5 expression is induced during TGF&beta;-stimulated EMT, whereas silencing of EPB41L5 by siRNA inhibits this transition. In EPB41L5 mutants, cell&ndash;cell adhesion is enhanced, and EMT is greatly impaired during gastrulation. Moreover, cell attachment, spreading, and mobility are greatly reduced by EPB41L5 deficiency. Gene transcription regulation during EMT occurs normally at the mRNA level; EPB41L5 siRNA does not affect either the decrease in E-cadherin or the increase in integrin expression. However, at the protein level, the decrease in E-cadherin and increase in integrin are inhibited in both EPB41L5 siRNA-treated NMuMG cells and mutant mesoderm. We find that EPB41L5 binds p120ctn through its N-terminal FERM domain, inhibiting p120ctn&ndash;E-cadherin binding. EPB41L5 overexpression causes E-cadherin relocalization into Rab5-positive vesicles in epithelial cells. At the same time, EPB41L5 binds to paxillin through its C terminus, enhancing integrin/paxillin association, thereby stimulating focal adhesion formation.</p>
]]></description>
<dc:creator><![CDATA[Hirano, M., Hashimoto, S., Yonemura, S., Sabe, H., Aizawa, S.]]></dc:creator>
<dc:date>2008-09-22</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200712086</dc:identifier>
<dc:title><![CDATA[EPB41L5 functions to post-transcriptionally regulate cadherin and integrin during epithelial-mesenchymal transition]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>6</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1230</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1217</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/6/1231?rss=1">
<title><![CDATA[The WAVE2 complex regulates T cell receptor signaling to integrins via Abl- and CrkL-C3G-mediated activation of Rap1]]></title>
<link>http://www.jcb.org/cgi/content/short/182/6/1231?rss=1</link>
<description><![CDATA[
<p>WAVE2 regulates T cell receptor (TCR)&ndash;stimulated actin cytoskeletal dynamics leading to both integrin clustering and affinity maturation. Although WAVE2 mediates integrin affinity maturation by recruiting vinculin and talin to the immunological synapse in an Arp2/3-dependent manner, the mechanism by which it regulates integrin clustering is unclear. We show that the Abl tyrosine kinase associates with the WAVE2 complex and TCR ligation induces WAVE2-dependent membrane recruitment of Abl. Furthermore, we show that WAVE2 regulates TCR-mediated activation of the integrin regulatory guanosine triphosphatase Rap1 via the recruitment and activation of the CrkL&ndash;C3G exchange complex. Moreover, we demonstrate that although Abl does not regulate the recruitment of CrkL&ndash;C3G into the membrane, it does affect the tyrosine phosphorylation of C3G, which is required for its guanine nucleotide exchange factor activity toward Rap1. This signaling node regulates not only TCR-stimulated integrin clustering but also affinity maturation. These findings identify a previously unknown mechanism by which the WAVE2 complex regulates TCR signaling to Rap1 and integrin activation.</p>
]]></description>
<dc:creator><![CDATA[Nolz, J. C., Nacusi, L. P., Segovis, C. M., Medeiros, R. B., Mitchell, J. S., Shimizu, Y., Billadeau, D. D.]]></dc:creator>
<dc:date>2008-09-22</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801121</dc:identifier>
<dc:title><![CDATA[The WAVE2 complex regulates T cell receptor signaling to integrins via Abl- and CrkL-C3G-mediated activation of Rap1]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>6</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1244</prism:endingPage>
<prism:publicationDate>2008-09-22</prism:publicationDate>
<prism:startingPage>1231</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/911?rss=1">
<title><![CDATA[Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/911?rss=1</link>
<description><![CDATA[
<p>During mitosis in metazoans, segregated chromosomes become enclosed by the nuclear envelope (NE), a double membrane that is continuous with the endoplasmic reticulum (ER). Recent in vitro data suggest that NE formation occurs by chromatin-mediated reorganization of the tubular ER; however, the basic principles of such a membrane-reshaping process remain uncharacterized. Here, we present a quantitative analysis of nuclear membrane assembly in mammalian cells using time-lapse microscopy. From the initial recruitment of ER tubules to chromatin, the formation of a membrane-enclosed, transport-competent nucleus occurs within ~12 min. Overexpression of the ER tubule-forming proteins reticulon 3, reticulon 4, and DP1 inhibits NE formation and nuclear expansion, whereas their knockdown accelerates nuclear assembly. This suggests that the transition from membrane tubules to sheets is rate-limiting for nuclear assembly. Our results provide evidence that ER-shaping proteins are directly involved in the reconstruction of the nuclear compartment and that morphological restructuring of the ER is the principal mechanism of NE formation in vivo.</p>
]]></description>
<dc:creator><![CDATA[Anderson, D. J., Hetzer, M. W.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200805140</dc:identifier>
<dc:title><![CDATA[Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>924</prism:endingPage>
<prism:publicationDate>2008-09-09</prism:publicationDate>
<prism:startingPage>911</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/925?rss=1">
<title><![CDATA[To flip or not to flip: lipid-protein charge interactions are a determinant of final membrane protein topology]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/925?rss=1</link>
<description><![CDATA[
<p>The molecular details of how lipids influence final topological organization of membrane proteins are not well understood. Here, we present evidence that final topology is influenced by lipid&ndash;protein interactions most likely outside of the translocon. The N-terminal half of <I>Escherichia coli</I> lactose permease (LacY) is inverted with respect to the C-terminal half and the membrane bilayer when assembled in mutants lacking phosphatidylethanolamine and containing only negatively charged phospholipids. We demonstrate that inversion is dependent on interactions between the net charge of the cytoplasmic surface of the N-terminal bundle and the negative charge density of the membrane bilayer surface. A transmembrane domain, acting as a molecular hinge between the two halves of the protein, must also exit from the membrane for inversion to occur. Phosphatidylethanolamine dampens the translocation potential of negative residues in favor of the cytoplasmic retention potential of positive residues, thus explaining the dominance of positive over negative amino acids as co- or post-translational topological determinants.</p>
]]></description>
<dc:creator><![CDATA[Bogdanov, M., Xie, J., Heacock, P., Dowhan, W.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200803097</dc:identifier>
<dc:title><![CDATA[To flip or not to flip: lipid-protein charge interactions are a determinant of final membrane protein topology]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>935</prism:endingPage>
<prism:publicationDate>2008-09-09</prism:publicationDate>
<prism:startingPage>925</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/937?rss=1">
<title><![CDATA[Cardiolipin defines the interactome of the major ADP/ATP carrier protein of the mitochondrial inner membrane]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/937?rss=1</link>
<description><![CDATA[
<p>Defined mutations in the mitochondrial ADP/ATP carrier (AAC) are associated with certain types of progressive external ophthalmoplegia. AAC is required for oxidative phosphorylation (OXPHOS), and dysregulation of AAC has been implicated in apoptosis. Little is known about the AAC interactome, aside from a known requirement for the phospholipid cardiolipin (CL) and that it is thought to function as a homodimer. Using a newly developed dual affinity tag, we demonstrate that yeast AAC2 physically participates in several protein complexes of distinct size and composition. The respiratory supercomplex and several smaller AAC2-containing complexes, including other members of the mitochondrial carrier family, are identified here. In the absence of CL, most of the defined interactions are destabilized or undetectable. The absence of CL and/or AAC2 results in distinct yet additive alterations in respiratory supercomplex structure and respiratory function. Thus, a single lipid can significantly alter the functional interactome of an individual protein.</p>
]]></description>
<dc:creator><![CDATA[Claypool, S. M., Oktay, Y., Boontheung, P., Loo, J. A., Koehler, C. M.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801152</dc:identifier>
<dc:title><![CDATA[Cardiolipin defines the interactome of the major ADP/ATP carrier protein of the mitochondrial inner membrane]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>950</prism:endingPage>
<prism:publicationDate>2008-09-09</prism:publicationDate>
<prism:startingPage>937</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/951?rss=1">
<title><![CDATA[MTOC translocation modulates IS formation and controls sustained T cell signaling]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/951?rss=1</link>
<description><![CDATA[
<p>The translocation of the microtubule-organizing center (MTOC) toward the nascent immune synapse (IS) is an early step in lymphocyte activation initiated by T cell receptor (TCR) signaling. The molecular mechanisms that control the physical movement of the lymphocyte MTOC remain largely unknown. We have studied the role of the dynein&ndash;dynactin complex, a microtubule-based molecular motor, in the process of T cell activation during T cell antigen&ndash;presenting cell cognate immune interactions. Impairment of dynein&ndash;dynactin complex activity, either by overexpressing the p50-dynamitin component of dynactin to disrupt the complex or by knocking down dynein heavy chain expression to prevent its formation, inhibited MTOC translocation after TCR antigen priming. This resulted in a strong reduction in the phosphorylation of molecules such as  chain&ndash;associated protein kinase 70 (ZAP70), linker of activated T cells (LAT), and Vav1; prevented the supply of molecules to the IS from intracellular pools, resulting in a disorganized and dysfunctional IS architecture; and impaired interleukin-2 production. Together, these data reveal MTOC translocation as an important mechanism underlying IS formation and sustained T cell signaling.</p>
]]></description>
<dc:creator><![CDATA[Martin-Cofreces, N. B., Robles-Valero, J., Cabrero, J. R., Mittelbrunn, M., Gordon-Alonso, M., Sung, C.-H., Alarcon, B., Vazquez, J., Sanchez-Madrid, F.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801014</dc:identifier>
<dc:title><![CDATA[MTOC translocation modulates IS formation and controls sustained T cell signaling]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>962</prism:endingPage>
<prism:publicationDate>2008-09-09</prism:publicationDate>
<prism:startingPage>951</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/873?rss=1">
<title><![CDATA[Separase cooperates with Zds1 and Zds2 to activate Cdc14 phosphatase in early anaphase]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/873?rss=1</link>
<description><![CDATA[
<p>Completion of mitotic exit and cytokinesis requires the inactivation of mitotic cyclin-dependent kinase (Cdk) activity. A key enzyme that counteracts Cdk during budding yeast mitotic exit is the Cdc14 phosphatase. Cdc14 is inactive for much of the cell cycle, sequestered by its inhibitor Net1 in the nucleolus. At anaphase onset, separase-dependent down-regulation of PP2A<sup>Cdc55</sup> allows phosphorylation of Net1 and consequent Cdc14 release. How separase causes PP2A<sup>Cdc55</sup> down-regulation is not known. Here, we show that two Cdc55-interacting proteins, Zds1 and Zds2, contribute to timely Cdc14 activation during mitotic exit. Zds1 and Zds2 are required downstream of separase to facilitate nucleolar Cdc14 release. Ectopic Zds1 expression in turn is sufficient to down-regulate PP2A<sup>Cdc55</sup> and promote Net1 phosphorylation. These findings identify Zds1 and Zds2 as new components of the mitotic exit machinery, involved in activation of the Cdc14 phosphatase at anaphase onset. Our results suggest that these proteins may act as separase-regulated PP2A<sup>Cdc55</sup> inhibitors.</p>
]]></description>
<dc:creator><![CDATA[Queralt, E., Uhlmann, F.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801054</dc:identifier>
<dc:title><![CDATA[Separase cooperates with Zds1 and Zds2 to activate Cdc14 phosphatase in early anaphase]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>883</prism:endingPage>
<prism:publicationDate>2008-09-08</prism:publicationDate>
<prism:startingPage>873</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/885?rss=1">
<title><![CDATA[Regulation of the endocycle/gene amplification switch by Notch and ecdysone signaling]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/885?rss=1</link>
<description><![CDATA[
<p>The developmental signals that regulate the switch from genome-wide DNA replication to site-specific amplification remain largely unknown. <I>Drosophila melanogaster</I> epithelial follicle cells, which begin synchronized chorion gene amplification after three rounds of endocycle, provide an excellent model for study of the endocycle/gene amplification (E/A) switch. Here, we report that down-regulation of Notch signaling and activation of ecdysone receptor (EcR) are required for the E/A switch in these cells. Extended Notch activity suppresses EcR activation and prevents exit from the endocycle. Tramtrack (Ttk), a zinc-finger protein essential for the switch, is regulated negatively by Notch and positively by EcR. Ttk overexpression stops endoreplication prematurely and alleviates the endocycle exit defect caused by extended Notch activity or removal of EcR function. Our results reveal a developmental pathway that includes down-regulation of Notch, activation of the EcR, up-regulation of Ttk to execute the E/A switch, and, for the first time, the genetic interaction between Notch and ecdysone signaling in regulation of cell cycle programs and differentiation.</p>
]]></description>
<dc:creator><![CDATA[Sun, J., Smith, L., Armento, A., Deng, W.-M.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200802084</dc:identifier>
<dc:title><![CDATA[Regulation of the endocycle/gene amplification switch by Notch and ecdysone signaling]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>896</prism:endingPage>
<prism:publicationDate>2008-09-08</prism:publicationDate>
<prism:startingPage>885</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/897?rss=1">
<title><![CDATA[The inner nuclear membrane protein Src1 associates with subtelomeric genes and alters their regulated gene expression]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/897?rss=1</link>
<description><![CDATA[
<p>Inner nuclear membrane proteins containing a LEM (LAP2, emerin, and MAN1) domain participate in different processes, including chromatin organization, gene expression, and nuclear envelope biogenesis. In this study, we identify a robust genetic interaction between transcription export (TREX) factors and yeast Src1, an integral inner nuclear membrane protein that is homologous to vertebrate LEM2. DNA macroarray analysis revealed that the expression of the phosphate-regulated genes <I>PHO11</I>, <I>PHO12</I>, and <I>PHO84</I> is up-regulated in <I>src1</I> cells. Notably, these <I>PHO</I> genes are located in subtelomeric regions of chromatin and exhibit a perinuclear location in vivo. Src1 spans the nuclear membrane twice and exposes its N and C domains with putative DNA-binding motifs to the nucleoplasm. Genome-wide chromatin immunoprecipitation&ndash;on-chip analyses indicated that Src1 is highly enriched at telomeres and subtelomeric regions of the yeast chromosomes. Our data show that the inner nuclear membrane protein Src1 functions at the interface between subtelomeric gene expression and TREX-dependent messenger RNA export through the nuclear pore complexes.</p>
]]></description>
<dc:creator><![CDATA[Grund, S. E., Fischer, T., Cabal, G. G., Antunez, O., Perez-Ortin, J. E., Hurt, E.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200803098</dc:identifier>
<dc:title><![CDATA[The inner nuclear membrane protein Src1 associates with subtelomeric genes and alters their regulated gene expression]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>910</prism:endingPage>
<prism:publicationDate>2008-09-08</prism:publicationDate>
<prism:startingPage>897</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/963?rss=1">
<title><![CDATA[RanBPM regulates cell shape, arrangement, and capacity of the female germline stem cell niche in Drosophila melanogaster]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/963?rss=1</link>
<description><![CDATA[
<p>Experiments in cultured cells with Ran-binding protein M (RanBPM) suggest that it links cell surface receptors and cell adhesion proteins. In this study, we undertake a genetic study of <I>RanBPM</I> function in the germline stem cell (GSC) niche of <I>Drosophila melanogaster</I> ovaries. We find that two RanBPM isoforms are produced from alternatively spliced transcripts, the longer of which is specifically enriched in the GSC niche, a cluster of somatic cells that physically anchors GSCs and expresses signals that maintain GSC fate. Loss of the long isoform from the niche causes defects in niche organization and cell size and increases the number of GSCs attached to the niche. In genetic mosaics for a null <I>RanBPM</I> allele, we find a strong bias for GSC attachment to mutant cap cells and observe abnormal accumulation of the adherens junction component Armadillo (&beta;-catenin) and the membrane skeletal protein Hu-li tai shao in mutant terminal filament cells. These results implicate RanBPM in the regulation of niche capacity and adhesion.</p>
]]></description>
<dc:creator><![CDATA[Dansereau, D. A., Lasko, P.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200711046</dc:identifier>
<dc:title><![CDATA[RanBPM regulates cell shape, arrangement, and capacity of the female germline stem cell niche in Drosophila melanogaster]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>977</prism:endingPage>
<prism:publicationDate>2008-09-08</prism:publicationDate>
<prism:startingPage>963</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/979?rss=1">
<title><![CDATA[IGFBP-5 regulates muscle cell differentiation by binding to IGF-II and switching on the IGF-II auto-regulation loop]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/979?rss=1</link>
<description><![CDATA[
<p>IGF-II stimulates both mitogenesis and myogenesis through its binding and activation of the IGF-I receptor (IGF-IR). How this growth factor pathway promotes these two opposite cellular responses is not well understood. We investigate whether local IGF binding protein-5 (IGFBP-5) promotes the myogenic action of IGF-II. IGFBP-5 is induced before the elevation of IGF-II expression during myogenesis. Knockdown of IGFBP-5 impairs myogenesis and suppresses IGF-II gene expression. IGF-II up-regulates its own gene expression via the PI3K-Akt signaling pathway. Adding IGF-II or constitutively activating Akt rescues the IGFBP-5 knockdown-caused defects. However, an IGF analogue that binds to the IGF-IR but not IGFBP has only a limited effect. When added with low concentrations of IGF-II, IGFBP-5 restores IGF-II expression and myogenic differentiation, whereas an IGF binding&ndash;deficient IGFBP-5 mutant has no effect. These findings suggest that IGFBP-5 promotes muscle cell differentiation by binding to and switching on the IGF-II auto-regulation loop.</p>
]]></description>
<dc:creator><![CDATA[Ren, H., Yin, P., Duan, C.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200712110</dc:identifier>
<dc:title><![CDATA[IGFBP-5 regulates muscle cell differentiation by binding to IGF-II and switching on the IGF-II auto-regulation loop]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>991</prism:endingPage>
<prism:publicationDate>2008-09-08</prism:publicationDate>
<prism:startingPage>979</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/993?rss=1">
<title><![CDATA[TLR ligand-induced podosome disassembly in dendritic cells is ADAM17 dependent]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/993?rss=1</link>
<description><![CDATA[
<p>Toll-like receptor (TLR) signaling induces a rapid reorganization of the actin cytoskeleton in cultured mouse dendritic cells (DC), leading to enhanced antigen endocytosis and a concomitant loss of filamentous actin&ndash;rich podosomes. We show that as podosomes are lost, TLR signaling induces prominent focal contacts and a transient reduction in DC migratory capacity in vitro. We further show that podosomes in mouse DC are foci of pronounced gelatinase activity, dependent on the enzyme membrane type I matrix metalloprotease (MT1-MMP), and that DC transiently lose the ability to degrade the extracellular matrix after TLR signaling. Surprisingly, MMP inhibitors block TLR signaling&ndash;induced podosome disassembly, although stimulated endocytosis is unaffected, which demonstrates that the two phenomena are not obligatorily coupled. Podosome disassembly caused by TLR signaling occurs normally in DC lacking MT1-MMP, and instead requires the tumor necrosis factor &ndash;converting enzyme ADAM17 (a disintegrin and metalloprotease 17), which demonstrates a novel role for this "sheddase" in regulating an actin-based structure.</p>
]]></description>
<dc:creator><![CDATA[West, M. A., Prescott, A. R., Chan, K. M., Zhou, Z., Rose-John, S., Scheller, J., Watts, C.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801022</dc:identifier>
<dc:title><![CDATA[TLR ligand-induced podosome disassembly in dendritic cells is ADAM17 dependent]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1005</prism:endingPage>
<prism:publicationDate>2008-09-08</prism:publicationDate>
<prism:startingPage>993</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/5/1007?rss=1">
<title><![CDATA[Inactivation of clathrin heavy chain inhibits synaptic recycling but allows bulk membrane uptake]]></title>
<link>http://www.jcb.org/cgi/content/short/182/5/1007?rss=1</link>
<description><![CDATA[
<p>Synaptic vesicle reformation depends on clathrin, an abundant protein that polymerizes around newly forming vesicles. However, how clathrin is involved in synaptic recycling in vivo remains unresolved. We test clathrin function during synaptic endocytosis using <I>clathrin heavy chain</I> (<I>chc</I>) mutants combined with chc photoinactivation to circumvent early embryonic lethality associated with <I>chc</I> mutations in multicellular organisms. Acute inactivation of chc at stimulated synapses leads to substantial membrane internalization visualized by live dye uptake and electron microscopy. However, chc-inactivated membrane cannot recycle and participate in vesicle release, resulting in a dramatic defect in neurotransmission maintenance during intense synaptic activity. Furthermore, inactivation of <I>chc</I> in the context of other endocytic mutations results in membrane uptake. Our data not only indicate that chc is critical for synaptic vesicle recycling but they also show that in the absence of the protein, bulk retrieval mediates massive synaptic membrane internalization.</p>
]]></description>
<dc:creator><![CDATA[Kasprowicz, J., Kuenen, S., Miskiewicz, K., Habets, R. L.P., Smitz, L., Verstreken, P.]]></dc:creator>
<dc:date>2008-09-08</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200804162</dc:identifier>
<dc:title><![CDATA[Inactivation of clathrin heavy chain inhibits synaptic recycling but allows bulk membrane uptake]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>5</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>1016</prism:endingPage>
<prism:publicationDate>2008-09-08</prism:publicationDate>
<prism:startingPage>1007</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/685?rss=1">
<title><![CDATA[Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/685?rss=1</link>
<description><![CDATA[
<p>Autophagy is the engulfment of cytosol and organelles by double-membrane vesicles termed autophagosomes. Autophagosome formation is known to require phosphatidylinositol 3-phosphate (PI(3)P) and occurs near the endoplasmic reticulum (ER), but the exact mechanisms are unknown. We show that double FYVE domain&ndash;containing protein 1, a PI(3)P-binding protein with unusual localization on ER and Golgi membranes, translocates in response to amino acid starvation to a punctate compartment partially colocalized with autophagosomal proteins. Translocation is dependent on Vps34 and beclin function. Other PI(3)P-binding probes targeted to the ER show the same starvation-induced translocation that is dependent on PI(3)P formation and recognition. Live imaging experiments show that this punctate compartment forms near Vps34-containing vesicles, is in dynamic equilibrium with the ER, and provides a membrane platform for accumulation of autophagosomal proteins, expansion of autophagosomal membranes, and emergence of fully formed autophagosomes. This PI(3)P-enriched compartment may be involved in autophagosome biogenesis. Its dynamic relationship with the ER is consistent with the idea that the ER may provide important components for autophagosome formation.</p>
]]></description>
<dc:creator><![CDATA[Axe, E. L., Walker, S. A., Manifava, M., Chandra, P., Roderick, H. L., Habermann, A., Griffiths, G., Ktistakis, N. T.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200803137</dc:identifier>
<dc:title><![CDATA[Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>701</prism:endingPage>
<prism:publicationDate>2008-08-26</prism:publicationDate>
<prism:startingPage>685</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/703?rss=1">
<title><![CDATA[In vivo reconstitution of autophagy in Saccharomyces cerevisiae]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/703?rss=1</link>
<description><![CDATA[
<p>Autophagy is a major intracellular degradative pathway that is involved in various human diseases. The role of autophagy, however, is complex; although the process is generally considered to be cytoprotective, it can also contribute to cellular dysfunction and disease progression. Much progress has been made in our understanding of autophagy, aided in large part by the identification of the <I>autophagy</I>-related (<I>ATG</I>) genes. Nonetheless, our understanding of the molecular mechanism remains limited. In this study, we generated a <I>Saccharomyces cerevisiae</I> multiple-knockout strain with 24 <I>ATG</I> genes deleted, and we used it to carry out an in vivo reconstitution of the autophagy pathway. We determined minimum requirements for different aspects of autophagy and studied the initial protein assembly steps at the phagophore assembly site. In vivo reconstitution enables the study of autophagy within the context of the complex regulatory networks that control this process, an analysis that is not possible with an in vitro system.</p>
]]></description>
<dc:creator><![CDATA[Cao, Y., Cheong, H., Song, H., Klionsky, D. J.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801035</dc:identifier>
<dc:title><![CDATA[In vivo reconstitution of autophagy in Saccharomyces cerevisiae]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>713</prism:endingPage>
<prism:publicationDate>2008-08-26</prism:publicationDate>
<prism:startingPage>703</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/663?rss=1">
<title><![CDATA[Heat shock and oxygen radicals stimulate ubiquitin-dependent degradation mainly of newly synthesized proteins]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/663?rss=1</link>
<description><![CDATA[
<p>Accumulation of misfolded oxidant-damaged proteins is characteristic of many diseases and aging. To understand how cells handle postsynthetically damaged proteins, we studied in <I>Saccharomyces cerevisiae</I> the effects on overall protein degradation of shifting from 30 to 38&deg;C, exposure to reactive oxygen species generators (paraquat or cadmium), or lack of superoxide dismutases. Degradation rates of long-lived proteins (i.e., most cell proteins) were not affected by these insults, even when there was widespread oxidative damage to proteins. However, exposure to 38&deg;C, paraquat, cadmium, or deletion of <I>SOD1</I> enhanced two- to threefold the degradation of newly synthesized proteins. By 1 h after synthesis, their degradation was not affected by these treatments. Degradation of these damaged cytosolic proteins requires the ubiquitin&ndash;proteasome pathway, including the E2s <I>UBC4</I>/<I>UBC5</I>, proteasomal subunit <I>RPN10</I>, and the <I>CDC48</I>&ndash;<I>UfD1</I>&ndash;<I>NPL4</I> complex. In yeast lacking these components, the nondegraded polypeptides accumulate as aggregates. Thus, many cytosolic proteins proceed through a prolonged "fragile period" during which they are sensitive to degradation induced by superoxide radicals or increased temperatures.</p>
]]></description>
<dc:creator><![CDATA[Medicherla, B., Goldberg, A. L.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200803022</dc:identifier>
<dc:title><![CDATA[Heat shock and oxygen radicals stimulate ubiquitin-dependent degradation mainly of newly synthesized proteins]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>673</prism:endingPage>
<prism:publicationDate>2008-08-25</prism:publicationDate>
<prism:startingPage>663</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/675?rss=1">
<title><![CDATA[E2-25K/Hip-2 regulates caspase-12 in ER stress-mediated A{beta} neurotoxicity]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/675?rss=1</link>
<description><![CDATA[
<p>Amyloid-&beta; (A&beta;) neurotoxicity is believed to contribute to the pathogenesis of Alzheimer's disease (AD). Previously we found that E2-25K/Hip-2, an E2 ubiquitin-conjugating enzyme, mediates A&beta; neurotoxicity. Here, we report that E2-25K/Hip-2 modulates caspase-12 activity via the ubiquitin/proteasome system. Levels of endoplasmic reticulum (ER)&ndash;resident caspase-12 are strongly up-regulated in the brains of AD model mice, where the enzyme colocalizes with E2-25K/Hip-2. A&beta; increases expression of E2-25K/Hip-2, which then stabilizes caspase-12 protein by inhibiting proteasome activity. This increase in E2-25K/Hip-2 also induces proteolytic activation of caspase-12 through its ability to induce calpainlike activity. Knockdown of E2-25K/Hip-2 expression suppresses neuronal cell death triggered by ER stress, and thus caspase-12 is required for the E2-25K/Hip-2&ndash;mediated cell death. Finally, we find that E2-25K/Hip-2&ndash;deficient cortical neurons are resistant to A&beta; toxicity and to the induction of ER stress and caspase-12 expression by A&beta;. E2-25K/Hip-2 is thus an essential upstream regulator of the expression and activation of caspase-12 in ER stress&ndash;mediated A&beta; neurotoxicity.</p>
]]></description>
<dc:creator><![CDATA[Song, S., Lee, H., Kam, T.-I., Tai, M. L., Lee, J.-Y., Noh, J.-Y., Shim, S. M., Seo, S. J., Kong, Y.-Y., Nakagawa, T., Chung, C.-W., Choi, D.-Y., Oubrahim, H., Jung, Y.-K.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200711066</dc:identifier>
<dc:title><![CDATA[E2-25K/Hip-2 regulates caspase-12 in ER stress-mediated A{beta} neurotoxicity]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>684</prism:endingPage>
<prism:publicationDate>2008-08-25</prism:publicationDate>
<prism:startingPage>675</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/715?rss=1">
<title><![CDATA[Poleward transport of Eg5 by dynein-dynactin in Xenopus laevis egg extract spindles]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/715?rss=1</link>
<description><![CDATA[
<p>Molecular motors are required for spindle assembly and maintenance during cell division. How motors move and interact inside spindles is unknown. Using photoactivation and photobleaching, we measure mitotic motor movement inside a dynamic spindle. We find that dynein&ndash;dynactin transports the essential motor Eg5 toward the spindle poles in <I>Xenopus laevis</I> egg extract spindles, revealing a direct interplay between two motors of opposite directionality. This transport occurs throughout the spindle except at the very spindle center and at the spindle poles, where Eg5 remains stationary. The variation of Eg5 dynamics with its position in the spindle is indicative of position-dependent functions of this motor protein. Our results suggest that Eg5 drives microtubule flux by antiparallel microtubule sliding in the spindle center, whereas the dynein-dependent concentration of Eg5 outside the spindle center could contribute to parallel microtubule cross-linking. These results emphasize the importance of spatially differentiated functions of motor proteins and contribute to our understanding of spindle organization.</p>
]]></description>
<dc:creator><![CDATA[Uteng, M., Hentrich, C., Miura, K., Bieling, P., Surrey, T.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801125</dc:identifier>
<dc:title><![CDATA[Poleward transport of Eg5 by dynein-dynactin in Xenopus laevis egg extract spindles]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>726</prism:endingPage>
<prism:publicationDate>2008-08-25</prism:publicationDate>
<prism:startingPage>715</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/727?rss=1">
<title><![CDATA[Novel role of the muskelin-RanBP9 complex as a nucleocytoplasmic mediator of cell morphology regulation]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/727?rss=1</link>
<description><![CDATA[
<p>The evolutionarily conserved kelch-repeat protein muskelin was identified as an intracellular mediator of cell spreading. We discovered that its morphological activity is controlled by association with RanBP9/RanBPM, a protein involved in transmembrane signaling and a conserved intracellular protein complex. By subcellular fractionation, endogenous muskelin is present in both the nucleus and the cytosol. Muskelin subcellular localization is coregulated by its C terminus, which provides a cytoplasmic restraint and also controls the interaction of muskelin with RanBP9, and its atypical lissencephaly-1 homology motif, which has a nuclear localization activity which is regulated by the status of the C terminus. Transient or stable short interfering RNA&ndash;based knockdown of muskelin resulted in protrusive cell morphologies with enlarged cell perimeters. Morphology was specifically restored by complementary DNAs encoding forms of muskelin with full activity of the C terminus for cytoplasmic localization and RanBP9 binding. Knockdown of RanBP9 resulted in equivalent morphological alterations. These novel findings identify a role for muskelin&ndash;RanBP9 complex in pathways that integrate cell morphology regulation and nucleocytoplasmic communication.</p>
]]></description>
<dc:creator><![CDATA[Valiyaveettil, M., Bentley, A. A., Gursahaney, P., Hussien, R., Chakravarti, R., Kureishy, N., Prag, S., Adams, J. C.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801133</dc:identifier>
<dc:title><![CDATA[Novel role of the muskelin-RanBP9 complex as a nucleocytoplasmic mediator of cell morphology regulation]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>739</prism:endingPage>
<prism:publicationDate>2008-08-25</prism:publicationDate>
<prism:startingPage>727</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/741?rss=1">
<title><![CDATA[SopB promotes phosphatidylinositol 3-phosphate formation on Salmonella vacuoles by recruiting Rab5 and Vps34]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/741?rss=1</link>
<description><![CDATA[
<p><I>Salmonella</I> colonizes a vacuolar niche in host cells during infection. Maturation of the <I>Salmonella</I>-containing vacuole (SCV) involves the formation of phosphatidylinositol 3-phosphate (PI(3)P) on its outer leaflet. SopB, a bacterial virulence factor with phosphoinositide phosphatase activity, was proposed to generate PI(3)P by dephosphorylating PI(3,4)P2, PI(3,5)P2, and PI(3,4,5)P3. Here, we examine the mechanism of PI(3)P formation during <I>Salmonella</I> infection. SopB is required to form PI(3,4)P2/PI(3,4,5)P3 at invasion ruffles and PI(3)P on nascent SCVs. However, we uncouple these events experimentally and reveal that SopB does not dephosphorylate PI(3,4)P2/PI(3,4,5)P3 to produce PI(3)P. Instead, the phosphatase activity of SopB is required for Rab5 recruitment to the SCV. Vps34, a PI3-kinase that associates with active Rab5, is responsible for PI(3)P formation on SCVs. Therefore, SopB mediates PI(3)P production on the SCV indirectly through recruitment of Rab5 and its effector Vps34. These findings reveal a link between phosphoinositide phosphatase activity and the recruitment of Rab5 to phagosomes.</p>
]]></description>
<dc:creator><![CDATA[Mallo, G. V., Espina, M., Smith, A. C., Terebiznik, M. R., Aleman, A., Finlay, B. B., Rameh, L. E., Grinstein, S., Brumell, J. H.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200804131</dc:identifier>
<dc:title><![CDATA[SopB promotes phosphatidylinositol 3-phosphate formation on Salmonella vacuoles by recruiting Rab5 and Vps34]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>752</prism:endingPage>
<prism:publicationDate>2008-08-25</prism:publicationDate>
<prism:startingPage>741</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/753?rss=1">
<title><![CDATA[Mechanotransduction in an extracted cell model: Fyn drives stretch- and flow-elicited PECAM-1 phosphorylation]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/753?rss=1</link>
<description><![CDATA[
<p>Mechanosensing followed by mechanoresponses by cells is well established, but the mechanisms by which mechanical force is converted into biochemical events are poorly understood. Vascular endothelial cells (ECs) exhibit flow- and stretch-dependent responses and are widely used as a model for studying mechanotransduction in mammalian cells. Platelet EC adhesion molecule 1 (PECAM-1) is tyrosine phosphorylated when ECs are exposed to flow or when PECAM-1 is directly pulled, suggesting that it is a mechanochemical converter. We show that PECAM-1 phosphorylation occurs when detergent-extracted EC monolayers are stretched, indicating that this phosphorylation is mechanically triggered and does not require the intact plasma membrane and soluble cytoplasmic components. Using kinase inhibitors and small interfering RNAs, we identify Fyn as the PECAM-1 kinase associated with the model. We further show that stretch- and flow-induced PECAM-1 phosphorylation in intact ECs is abolished when Fyn expression is down-regulated. We suggest that PECAM-1 and Fyn are essential components of a PECAM-1&ndash;based mechanosensory complex in ECs.</p>
]]></description>
<dc:creator><![CDATA[Chiu, Y.-J., McBeath, E., Fujiwara, K.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801062</dc:identifier>
<dc:title><![CDATA[Mechanotransduction in an extracted cell model: Fyn drives stretch- and flow-elicited PECAM-1 phosphorylation]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>763</prism:endingPage>
<prism:publicationDate>2008-08-25</prism:publicationDate>
<prism:startingPage>753</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/765?rss=1">
<title><![CDATA[Single-molecule analysis of CD9 dynamics and partitioning reveals multiple modes of interaction in the tetraspanin web]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/765?rss=1</link>
<description><![CDATA[
<p>Tetraspanins regulate cell migration, sperm&ndash;egg fusion, and viral infection. Through interactions with one another and other cell surface proteins, tetraspanins form a network of molecular interactions called the tetraspanin web. In this study, we use single-molecule fluorescence microscopy to dissect dynamics and partitioning of the tetraspanin CD9. We show that lateral mobility of CD9 in the plasma membrane is regulated by at least two modes of interaction that each exhibit specific dynamics. The majority of CD9 molecules display Brownian behavior but can be transiently confined to an interaction platform that is in permanent exchange with the rest of the membrane. These platforms, which are enriched in CD9 and its binding partners, are constant in shape and localization. Two CD9 molecules undergoing Brownian trajectories can also codiffuse, revealing extra platform interactions. CD9 mobility and partitioning are both dependent on its palmitoylation and plasma membrane cholesterol. Our data show the high dynamic of interactions in the tetraspanin web and further indicate that the tetraspanin web is distinct from raft microdomains.</p>
]]></description>
<dc:creator><![CDATA[Espenel, C., Margeat, E., Dosset, P., Arduise, C., Le Grimellec, C., Royer, C. A., Boucheix, C., Rubinstein, E., Milhiet, P.-E.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200803010</dc:identifier>
<dc:title><![CDATA[Single-molecule analysis of CD9 dynamics and partitioning reveals multiple modes of interaction in the tetraspanin web]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>776</prism:endingPage>
<prism:publicationDate>2008-08-25</prism:publicationDate>
<prism:startingPage>765</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/777?rss=1">
<title><![CDATA[uPAR promotes formation of the p130Cas-Crk complex to activate Rac through DOCK180]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/777?rss=1</link>
<description><![CDATA[
<p>The urokinase-type plasminogen activator receptor (uPAR) drives tumor cell membrane protrusion and motility through activation of Rac; however, the pathway leading from uPAR to Rac activation has not been described. In this study we identify DOCK180 as the guanine nucleotide exchange factor acting downstream of uPAR. We show that uPAR cooperates with integrin complexes containing &beta;<SUB>3</SUB> integrin to drive formation of the p130Cas&ndash;CrkII signaling complex and activation of Rac, resulting in a Rac-driven elongated-mesenchymal morphology, cell motility, and invasion. Our findings identify a signaling pathway underlying the morphological changes and increased cell motility associated with uPAR expression.</p>
]]></description>
<dc:creator><![CDATA[Smith, H. W., Marra, P., Marshall, C. J.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200712050</dc:identifier>
<dc:title><![CDATA[uPAR promotes formation of the p130Cas-Crk complex to activate Rac through DOCK180]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>790</prism:endingPage>
<prism:publicationDate>2008-08-25</prism:publicationDate>
<prism:startingPage>777</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/791?rss=1">
<title><![CDATA[Structural basis for distinctive recognition of fibrinogen {gamma}C peptide by the platelet integrin {alpha}IIb{beta}3]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/791?rss=1</link>
<description><![CDATA[
<p>Hemostasis and thrombosis (blood clotting) involve fibrinogen binding to integrin <SUB>IIb</SUB>&beta;<SUB>3</SUB> on platelets, resulting in platelet aggregation. <SUB>v</SUB>&beta;<SUB>3</SUB> binds fibrinogen via an Arg-Asp-Gly (RGD) motif in fibrinogen's  subunit. <SUB>IIb</SUB>&beta;<SUB>3</SUB> also binds to fibrinogen; however, it does so via an unstructured RGD-lacking C-terminal region of the  subunit (C peptide). These distinct modes of fibrinogen binding enable <SUB>IIb</SUB>&beta;<SUB>3</SUB> and <SUB>v</SUB>&beta;<SUB>3</SUB> to function cooperatively in hemostasis. In this study, crystal structures reveal the integrin <SUB>IIb</SUB>&beta;<SUB>3</SUB>&ndash;C peptide interface, and, for comparison, integrin <SUB>IIb</SUB>&beta;<SUB>3</SUB> bound to a lamprey C primordial RGD motif. Compared with RGD, the GAKQAGDV motif in C adopts a different backbone configuration and binds over a more extended region. The integrin metal ion&ndash;dependent adhesion site (MIDAS) Mg<sup>2+</sup> ion binds the C Asp side chain. The adjacent to MIDAS (ADMIDAS) Ca<sup>2+</sup> ion binds the C C terminus, revealing a contribution for ADMIDAS in ligand binding. Structural data from this natively disordered C peptide enhances our understanding of the involvement of C peptide and integrin <SUB>IIb</SUB>&beta;<SUB>3</SUB> in hemostasis and thrombosis.</p>
]]></description>
<dc:creator><![CDATA[Springer, T. A., Zhu, J., Xiao, T.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200801146</dc:identifier>
<dc:title><![CDATA[Structural basis for distinctive recognition of fibrinogen {gamma}C peptide by the platelet integrin {alpha}IIb{beta}3]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>800</prism:endingPage>
<prism:publicationDate>2008-08-25</prism:publicationDate>
<prism:startingPage>791</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

<item rdf:about="http://www.jcb.org/cgi/content/short/182/4/801?rss=1">
<title><![CDATA[Integrins control the positioning and proliferation of follicle stem cells in the Drosophila ovary]]></title>
<link>http://www.jcb.org/cgi/content/short/182/4/801?rss=1</link>
<description><![CDATA[
<p>Adult stem cells are maintained in specialized microenvironments called niches, which promote self-renewal and prevent differentiation. In this study, we show that follicle stem cells (FSCs) in the <I>Drosophila melanogaster</I> ovary rely on cues that are distinct from those of other ovarian stem cells to establish and maintain their unique niche. We demonstrate that integrins anchor FSCs to the basal lamina, enabling FSCs to maintain their characteristic morphology and position. Integrin-mediated FSC anchoring is also essential for proper development of differentiating prefollicle cells that arise from asymmetrical FSC divisions. Our results support a model in which FSCs contribute to the formation and maintenance of their own niche by producing the integrin ligand, laminin A (LanA). Together, LanA and integrins control FSC proliferation rates, a role that is separable from their function in FSC anchoring. Importantly, LanA-integrin function is not required to maintain other ovarian stem cell populations, demonstrating that distinct pathways regulate niche&ndash;stem cell communication within the same organ.</p>
]]></description>
<dc:creator><![CDATA[O'Reilly, A. M., Lee, H.-H., Simon, M. A.]]></dc:creator>
<dc:date>2008-08-25</dc:date>
<dc:identifier>info:doi/10.1083/jcb.200710141</dc:identifier>
<dc:title><![CDATA[Integrins control the positioning and proliferation of follicle stem cells in the Drosophila ovary]]></dc:title>
<dc:publisher>The Rockefeller University Press</dc:publisher>
<prism:number>4</prism:number>
<prism:volume>182</prism:volume>
<prism:endingPage>815</prism:endingPage>
<prism:publicationDate>2008-08-25</prism:publicationDate>
<prism:startingPage>801</prism:startingPage>
<prism:section>Articles</prism:section>
</item>

</rdf:RDF>